When October rolls around, I get this unstoppable urge to put pumpkin in literally everything. But this year, when my sister mentioned she couldn't eat regular pumpkin pie because of her gluten sensitivity, I knew I had to get creative. That's how these gluten-free crustless pumpkin pie cupcakes were born!

These aren't your typical cupcakes (they're way better, honestly). They're more like individual pumpkin pies without all the fuss of making a crust. Plus, they're completely dairy-free, which means everyone at your fall gathering can actually enjoy them.
I've been making these for three years now, ever since Emily's school started having more kids with food allergies in her class. These small batch chocolate chip cookies got me thinking about how to make desserts that work for everyone, and these cupcakes have become my go-to solution for inclusive fall baking.
Why You'll Love This Gluten-Free Crustless Pumpkin Pie Recipe
Jump to:
- Why You'll Love This Gluten-Free Crustless Pumpkin Pie Recipe
- Gluten-Free Crustless Pumpkin Pie Cupcakes Ingredients You'll Need
- How To Make Gluten-Free Crustless Pumpkin Pie Cupcakes
- Storage Tips for Your Gluten-Free Crustless Pumpkin Pie Treats
- Gluten-Free Crustless Pumpkin Pie Variations and Tips
- Frequently Asked Questions About Gluten-Free Crustless Pumpkin Pie Cupcakes
- Recipes You May Like
- Why These Gluten-Free Crustless Pumpkin Pie Cupcakes Work So Well
- Gluten-Free Crustless Pumpkin Pie Cupcakes
These cupcakes solve so many problems I didn't even know I had! Here's why they've become my new fall obsession:
- No crust drama - Seriously, who has time for rolling out pie dough when you're already juggling everything else?
- Ready in 35 minutes - From start to finish, including prep time
- Perfect for parties - Individual portions mean no messy pie cutting
- Allergy-friendly - Works for gluten-free AND dairy-free diets
- Make-ahead magic - They actually taste better after sitting overnight in the fridge
- Custard-like texture - All the creamy goodness of pumpkin pie in cupcake form
Gluten-Free Crustless Pumpkin Pie Cupcakes Ingredients You'll Need
Here's what goes into these little beauties:
For the Cupcakes:
- 15 ounce can pumpkin puree (not pumpkin pie filling!)
- ½ cup granulated sugar
- ¼ cup lightly packed brown sugar
- 2 large eggs
- 1 large egg yolk
- 1 teaspoon pure vanilla extract
- ¾ cup canned coconut milk (full-fat only)
- ½ cup gluten-free all-purpose flour blend
- 2 teaspoons pumpkin pie spice
- ½ teaspoon salt
- ¼ teaspoon baking soda
- ¼ teaspoon baking powder
For Topping:
- Coconut whipped cream (I use So Delicious CocoWhip)
The coconut milk is absolutely crucial here - don't even think about substituting it with the boxed stuff. I learned that lesson the hard way when my first batch turned out watery and sad.
How To Make Gluten-Free Crustless Pumpkin Pie Cupcakes
Prep Your Pan
- Preheat your oven to 350°F
- Line a muffin pan with paper liners or silicone muffin liners
- Generously spray the liners with cooking spray on both bottoms and sides
Trust me on that cooking spray - these cupcakes have a custard-like texture that loves to stick. I use silicone liners now because they work so much better than paper ones.


Mix the Wet Ingredients
- Combine pumpkin and sugars in a large bowl, mixing until smooth
- Add eggs and egg yolk one at a time, beating well after each addition
- Stir in vanilla and coconut milk until everything's completely combined
The mixture should look smooth and creamy at this point. If it looks lumpy, keep mixing!
Prepare the Dry Ingredients
- Sift together flour blend, pumpkin pie spice, salt, baking soda, and baking powder in a separate bowl
- Add dry ingredients to wet ingredients, stirring just until fully combined
Don't overmix here - we want tender cupcakes, not tough ones.
Bake to Perfection


- Scoop batter into prepared muffin cups - they'll be fairly full, which is exactly right
- Bake for 25 minutes until centers are set but still slightly jiggly
- Cool in pan for 30 minutes, then refrigerate for at least 1 hour before serving
- Top with coconut whipped cream and enjoy!
Storage Tips for Your Gluten-Free Crustless Pumpkin Pie Treats
These cupcakes are actually better the next day! Here's how to store them properly:
Make-Ahead: I always make these the night before I need them. The flavors meld together beautifully overnight, and the texture becomes even more custard-like.
Storage: Cover with plastic wrap or store in an airtight container in the refrigerator for up to 5 days. Don't leave them out at room temperature - they need to stay chilled.
Freezing: You can freeze these for up to 3 months. Just thaw them in the fridge overnight before serving.
Gluten-Free Crustless Pumpkin Pie Variations and Tips

Want to switch things up? Here are some variations I've tried:
- Add mini chocolate chips for a fun twist (Emily's personal request)
- Swirl in cream cheese before baking for extra richness
- Top with chopped pecans instead of whipped cream
- Use maple syrup in place of some of the granulated sugar
- Add a pinch of cardamom to the spice blend for something different
The key to perfect dairy-free pumpkin cupcakes is using quality ingredients. Don't skimp on the vanilla, and make sure your pumpkin puree is pure pumpkin, not pie filling.
Frequently Asked Questions About Gluten-Free Crustless Pumpkin Pie Cupcakes
This is completely normal! These are custard-style cupcakes, not traditional cake cupcakes, so they naturally sink as they cool. Simply fill the center with whipped cream.
No, you must use full-fat canned coconut milk for best results. Boxed or refrigerated coconut milk won't provide the right texture and consistency.
Store covered in the refrigerator for up to 5 days. They actually taste better after chilling overnight, so making them ahead is recommended.
Use high-quality paper liners or silicone muffin liners, and generously spray them with cooking spray on the bottom and sides before adding batter.
Recipes You May Like
If you're loving these gluten-free fall desserts, you'll definitely want to try these other seasonal treats:
- Pumpkin Custard Pie - For when you want the full traditional pie experience
- Gluten-Free Apple Pie - Another fantastic gluten-free fall dessert option
- Old-Fashioned Pumpkin Bread Recipe - Perfect for using up that extra pumpkin puree
Why These Gluten-Free Crustless Pumpkin Pie Cupcakes Work So Well

After making these dozens of times, I've figured out what makes them special. The combination of eggs and coconut milk creates this amazing custard-like texture that's way more interesting than regular cupcakes. Plus, without a crust to worry about, you can focus all your energy on getting the filling just right.
The pumpkin pie spice blend really makes these shine. If you don't have it on hand, you can make your own with cinnamon, nutmeg, ginger, and allspice. But honestly? Just buy the pre-made blend - it saves time and tastes consistent every single time.
These have become my go-to dessert for any fall gathering. They look fancy enough for Thanksgiving dinner but easy enough for a random Tuesday when you're feeling seasonal. Plus, knowing that everyone can enjoy them regardless of dietary restrictions? That's worth its weight in gold.




Gluten-Free Crustless Pumpkin Pie Cupcakes
Equipment
- Muffin Pan
- Cupcake Liners
Ingredients
Cupcakes
- 15 ounce pumpkin puree canned
- ½ cup granulated sugar
- ¼ cup brown sugar lightly packed
- 2 large eggs
- 1 large egg yolk
- 1 teaspoon pure vanilla extract
- ¾ cup canned coconut milk full-fat
- ½ cup gluten-free all-purpose flour blend
- 2 teaspoons pumpkin pie spice
- ½ teaspoon salt
- ¼ teaspoon baking soda
- ¼ teaspoon baking powder
For Topping
- coconut milk whipped cream such as So Delicious CocoWhip
Instructions
- Preheat the oven to 350°F. Line a muffin pan with paper liners or silicone muffin liners. Generously spray the bottoms and sides of the liners with cooking spray.
- In a large bowl, mix together the pumpkin, granulated sugar, brown sugar, eggs and egg yolk, vanilla, and coconut milk until smooth.
- In another bowl, sift together the flour blend, pumpkin pie spice, salt, baking soda, and baking powder.
- Add the dry ingredients to the wet and stir to fully combine.
- Scoop the batter into the prepared muffin pan. The cups will be fairly full. Bake the cupcakes for 25 minutes.
- Let the cupcakes cool in the pan for 30 minutes. Refrigerate for at least 1 hour before serving. Top with coconut milk or regular whipped cream. Enjoy!






